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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_12_9442191_9443230_R

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
9442191 - 9443230
Intron Length:
1040

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TTG|GTAAGCCCT
5'SS Class:
strong_major
3'SS Sequence:
GTGTGTTTTGCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CTGCCAC
U12 Branch Point Sequence:
AGTGCCTGAGTT
Flanking Amino Acid:
SLYVWYFWLLAPGRALYLLW
Intron Amino Acid Position:
59

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
80.7
0.72
1
68
42.9
Major BPS
46
-0.2
1.4
53.5
42
Major PPT
79.2
0.66
1
72.9
42.2
Minor 5ss
40.7
-1
3.1
55
43.2
Minor BPS
49.7
0.05
1.8
68.24
42.6

Associated Gene:

Gene:
TMEM208
Ensembl Gene ID:
ENSAPLG00000025971
Chromosome:
12

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000017744
9442053 - 9446652
4600