Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_12_9479659_9479815_F

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

9479659 - 9479815

Intron Length:

157

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

CAG|GTGAGGAGC

5'SS Class:

strong_major

3'SS Sequence:

TTTCTCTCCGCAG|G

3'SS Class:

strong_PPT

U2 Branch Point Sequence:

GCAGGAT

U12 Branch Point Sequence:

TTTTTCTCTCCG

Flanking Amino Acid:

AGGVGASSCQGDSGGPLVYQ

Intron Amino Acid Position:

209

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

85.2

0.83

0.9

38.2

Major BPS

41.9

-0.5

1.5

33.4

42.7

Major PPT

85.2

0.79

0.7

24.1

Minor 5ss

27.2

-2.6

33.9

41.8

Minor BPS

39.3

-0.9

3.7

63.18

44.7

Associated Gene:

Gene:

CTRL

Ensembl Gene ID:

ENSAPLG00000008866

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000009278

9478092 - 9479977

1886

ENSAPLT00000016111

9477024 - 9479977

2954