Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_12_9486610_9510054_R

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

9486610 - 9510054

Intron Length:

23445

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

GAG|GTAAGTGGG

5'SS Class:

strong_major

3'SS Sequence:

TTTTGTGTTTCAG|C

3'SS Class:

strong_PPT

U2 Branch Point Sequence:

GTTTTAT

U12 Branch Point Sequence:

TTTATGCTAATT

Flanking Amino Acid:

LKGKYSYSGEPWPSVSNLAK

Intron Amino Acid Position:

316

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

93.3

1.02

0.8

76.2

39.9

Major BPS

78.7

0.71

1.2

71.7

44.6

Major PPT

86.8

0.83

0.9

84.6

Minor 5ss

32.1

-2

3.1

40.6

45.6

Minor BPS

48.6

-0

2.3

76.82

40.1

Associated Gene:

Gene:

PSKH1

Ensembl Gene ID:

ENSAPLG00000009622

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000010013

9485400 - 9511086

25687