Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_12_9511087_9512219_R

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

5UTR

Intron Coordinates:

9511087 - 9512219

Intron Length:

1133

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

CTG|GTAAGCTCC

5'SS Class:

strong_major

3'SS Sequence:

TCCTTTTTGTAAG|G

3'SS Class:

major_PPT

U2 Branch Point Sequence:

TGTTTAT

U12 Branch Point Sequence:

TCCTGTTTATCT

Flanking Amino Acid:

5UTR

Intron Amino Acid Position:

5UTR

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

81.2

0.74

68.5

37.5

Major BPS

81.3

0.78

1.1

71.7

44.6

Major PPT

70.7

0.47

1.1

78.2

Minor 5ss

45.3

-0.5

2.8

57.3

41.5

Minor BPS

51.3

0.12

70.73

46.8

Associated Gene:

Gene:

PSKH1

Ensembl Gene ID:

ENSAPLG00000009622

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000047777

9499637 - 9512332

12696