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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_12_9518311_9518428_R

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
9518311 - 9518428
Intron Length:
118

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAA|GTGAGTGGC
5'SS Class:
major
3'SS Sequence:
CCCTGTCCCCCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TCCCCAC
U12 Branch Point Sequence:
CCCTCCCCACGC
Flanking Amino Acid:
MEAQELDTICKSWDDFHACA
Intron Amino Acid Position:
78

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
79.8
0.7
0.9
69.4
35.6
Major BPS
49.9
-0
1.3
60.3
37.5
Major PPT
70.1
0.45
0.8
60.9
35.2
Minor 5ss
29.3
-2.4
3.1
34.7
35.3
Minor BPS
37.4
-0.9
2.1
42.5
44.8

Associated Gene:

Gene:
NRN1L
Ensembl Gene ID:
ENSAPLG00000026334
Chromosome:
12

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000039554
9518037 - 9520400
2364