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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_12_9536710_9536931_R

Intron Information:

Intron Rank:
16
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
9536710 - 9536931
Intron Length:
222

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAAATAGA
5'SS Class:
strong_major
3'SS Sequence:
TTGTGCCTCACAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
GTTTCAT
U12 Branch Point Sequence:
TTGTGCCTCACA
Flanking Amino Acid:
STSVTDASMSRSSLIASQCC
Intron Amino Acid Position:
639

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
86.9
0.87
0.9
80.4
34.2
Major BPS
82.2
0.8
1.1
85.7
34.9
Major PPT
75.6
0.58
0.9
68.9
37.2
Minor 5ss
34.4
-1.8
2.8
42.8
44
Minor BPS
47
-0.2
2.4
67.66
44.8

Associated Gene:

Gene:
EDC4
Ensembl Gene ID:
ENSAPLG00000009238
Chromosome:
12

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000009681
9521651 - 9554648
32998