Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_12_9547554_9549125_R

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

9547554 - 9549125

Intron Length:

1572

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

GAG|GTGAGGTAC

5'SS Class:

strong_major

3'SS Sequence:

GTCTTTTCTGCAG|C

3'SS Class:

strong_PPT

U2 Branch Point Sequence:

AATAAAT

U12 Branch Point Sequence:

TAAATGGTGACT

Flanking Amino Acid:

SNSYLAYALRAASNGSAMVR

Intron Amino Acid Position:

150

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

0.85

0.9

75.2

30.5

Major BPS

65.7

0.39

71.3

30.3

Major PPT

85.5

0.8

80.6

31.4

Minor 5ss

31.6

-2.1

3.2

40.1

46.3

Minor BPS

40.9

-0.6

2.5

60.7

Associated Gene:

Gene:

EDC4

Ensembl Gene ID:

ENSAPLG00000009238

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000019722

9520651 - 9554648

33998

ENSAPLT00000009681

9521651 - 9554648

32998