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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_12_9563280_9567022_R

Intron Information:

Intron Rank:
2
Intron Class:
major-like
Intron Phase:
2
Intron Coordinates:
9563280 - 9567022
Intron Length:
3743

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TCT|GTAAGTCTG
5'SS Class:
major
3'SS Sequence:
TTTCATTATAGAG|C
3'SS Class:
degenerate_major
U2 Branch Point Sequence:
TTTTCAT
U12 Branch Point Sequence:
CATTCTTTATTT
Flanking Amino Acid:
RAKQPSLKNSLLPFQKIQHS
Intron Amino Acid Position:
48

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
73.5
0.56
1.1
66
45.2
Major BPS
100
1.24
0.5
100
0
Major PPT
59.8
0.22
1.7
69.1
40.7
Minor 5ss
40.7
-1
3.1
60.3
43.9
Minor BPS
64.2
0.52
1.6
76.5
40.9

Associated Gene:

Gene:
NUTF2
Ensembl Gene ID:
ENSAPLG00000009210
Chromosome:
12

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000009577
9560130 - 9570234
10105