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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_12_9567067_9570135_R

Intron Information:

Intron Rank:
1
Intron Class:
major-like
Intron Phase:
0
Intron Coordinates:
9567067 - 9570135
Intron Length:
3069

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TAT|GTAAGTATC
5'SS Class:
strong_major
3'SS Sequence:
CTTACATGGGAAG|G
3'SS Class:
degenerate_major
U2 Branch Point Sequence:
CTTACAT
U12 Branch Point Sequence:
CATGCCTTACAT
Flanking Amino Acid:
ADRTQLGAIYDSSSRAKQPS
Intron Amino Acid Position:
34

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
86.5
0.86
0.9
87.3
27
Major BPS
70.4
0.51
1.1
78.7
33.6
Major PPT
50.6
0.01
1.2
52.7
40.8
Minor 5ss
42.7
-0.8
2.8
59.4
38.1
Minor BPS
53.2
0.18
1.9
70.09
46.4

Associated Gene:

Gene:
NUTF2
Ensembl Gene ID:
ENSAPLG00000009210
Chromosome:
12

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000009577
9560130 - 9570234
10105