Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_12_9578143_9585745_R

Intron Information:

Intron Rank:

Intron Class:

major-like

Intron Phase:

Intron Coordinates:

9578143 - 9585745

Intron Length:

7603

Sequence Information:

Terminal Dinucleotides:

GC-AG

5'SS Sequence:

GCC|GCAAGTCCT

5'SS Class:

weak_major

3'SS Sequence:

ATCTTTCTTCCAG|G

3'SS Class:

strong_PPT

U2 Branch Point Sequence:

TTTTTAT

U12 Branch Point Sequence:

TATTTTTTATAT

Flanking Amino Acid:

RVCSEHFQGGRICCKPGAQR

Intron Amino Acid Position:

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

55.1

0.12

2.1

69.7

42.4

Major BPS

96.5

1.15

0.6

34.2

Major PPT

85.4

0.8

77.4

36.3

Minor 5ss

28.4

-2.5

3.9

47.3

41.1

Minor BPS

60.1

0.39

1.7

77.81

38.6

Associated Gene:

Gene:

THAP11

Ensembl Gene ID:

ENSAPLG00000028979

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000046216

9578009 - 9589964

11956