Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_12_9586737_9586875_F

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

9586737 - 9586875

Intron Length:

139

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

ACC|GTGAGTAGG

5'SS Class:

major

3'SS Sequence:

GATTTGTTGGCAG|A

3'SS Class:

major_PPT

U2 Branch Point Sequence:

CTTTGAT

U12 Branch Point Sequence:

AATGCTTTGATT

Flanking Amino Acid:

RGLLRRVIRNQPQVSPLAPP

Intron Amino Acid Position:

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

64.5

0.34

1.3

46.2

Major BPS

0.85

0.9

39.9

Major PPT

0.45

1.1

65.5

45.1

Minor 5ss

31.5

-2.1

2.7

39.9

Minor BPS

62.8

0.48

1.3

73.5

37.9

Associated Gene:

Gene:

Ensembl Gene ID:

ENSAPLG00000008854

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000046781

9586294 - 9606017

19724

ENSAPLT00000027940

9585647 - 9605749

20103

ENSAPLT00000009210

9586294 - 9605936

19643