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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_12_9588570_9589934_F

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
9588570 - 9589934
Intron Length:
1365

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAGGCCA
5'SS Class:
strong_major
3'SS Sequence:
AACTTTGTTTTAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTCTCAA
U12 Branch Point Sequence:
AATTTCTCAAAT
Flanking Amino Acid:
AADKRLPQNQAHSTLDSTLA
Intron Amino Acid Position:
143

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
88.1
0.9
0.9
72.3
39
Major BPS
85.7
0.89
0.8
85.9
22.5
Major PPT
72.5
0.51
0.9
69.9
40.6
Minor 5ss
31
-2.2
3.2
39.6
45.9
Minor BPS
61.8
0.45
1.6
77.34
38.4

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000008854
Chromosome:
12

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000046781
9586294 - 9606017
19724
ENSAPLT00000027940
9585647 - 9605749
20103
ENSAPLT00000009210
9586294 - 9605936
19643