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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_12_9589966_9591183_F

Intron Information:

Intron Rank:
5
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
9589966 - 9591183
Intron Length:
1218

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TCG|GTGAGTTGA
5'SS Class:
strong_major
3'SS Sequence:
CCCATTTTTACAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTGAA
U12 Branch Point Sequence:
AGGTTTTGAAAA
Flanking Amino Acid:
AHSTLDSTLARSLRMPKNRK
Intron Amino Acid Position:
153

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
82
0.75
0.9
71.4
36.8
Major BPS
87.2
0.92
0.8
77.7
37.1
Major PPT
80.8
0.69
0.8
74.6
33.6
Minor 5ss
34.6
-1.8
2.8
40.9
45.4
Minor BPS
49.1
-0
1.5
56.26
36.5

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000008854
Chromosome:
12

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000046781
9586294 - 9606017
19724
ENSAPLT00000027940
9585647 - 9605749
20103
ENSAPLT00000009210
9586294 - 9605936
19643