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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_12_9591196_9591252_F

Intron Information:

Intron Rank:
6
Intron Class:
major-like
Intron Phase:
2
Intron Coordinates:
9591196 - 9591252
Intron Length:
57

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAT|GTCACTTGG
5'SS Class:
weak_major
3'SS Sequence:
GCTTATTACGGAG|G
3'SS Class:
degenerate_major
U2 Branch Point Sequence:
TTATTAC
U12 Branch Point Sequence:
CACTGTTGAAAA
Flanking Amino Acid:
LDSTLARSLRMPKNRKAIDI
Intron Amino Acid Position:
157

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
53.6
0.08
1.5
53.6
46.1
Major BPS
74.8
0.62
1.1
66
40.5
Major PPT
49.5
-0
1.7
57.8
42
Minor 5ss
43
-0.8
2.7
54.2
43.1
Minor BPS
44.3
-0.4
1.9
50.11
41.1

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000008854
Chromosome:
12

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000009210
9586294 - 9605936
19643