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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_12_9600814_9601980_F

Intron Information:

Intron Rank:
10
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
9600814 - 9601980
Intron Length:
1167

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAGGAAAA
5'SS Class:
strong_major
3'SS Sequence:
TTTTTCTCCTTAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TCCTCAA
U12 Branch Point Sequence:
ACTTCCTCAAGT
Flanking Amino Acid:
EAEMEGQESEEGSMKTPTFV
Intron Amino Acid Position:
443

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
83
0.78
1
76.9
33.7
Major BPS
73.1
0.58
1
73.8
32.3
Major PPT
85.6
0.8
0.6
85.7
21.5
Minor 5ss
31.4
-2.1
3.1
39.2
46.2
Minor BPS
62.5
0.47
1.9
78.58
43.6

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000008854
Chromosome:
12

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000046781
9586294 - 9606017
19724
ENSAPLT00000027940
9585647 - 9605749
20103
ENSAPLT00000009210
9586294 - 9605936
19643