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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_12_9602078_9603481_F

Intron Information:

Intron Rank:
11
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
9602078 - 9603481
Intron Length:
1404

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TGC|GTAAGTATA
5'SS Class:
major
3'SS Sequence:
TGTGAATTTTCAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TGTTCAT
U12 Branch Point Sequence:
GTTTGTTCATCT
Flanking Amino Acid:
TPRSAKPAAPAFHQRSPLQP
Intron Amino Acid Position:
475

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
72.6
0.53
1.3
78
38.6
Major BPS
84.8
0.86
1
85.7
34.9
Major PPT
75.1
0.56
1
70.3
44.5
Minor 5ss
40.3
-1.1
2.8
46.9
41.8
Minor BPS
48
-0
2.2
72.71
44.3

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000008854
Chromosome:
12

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000046781
9586294 - 9606017
19724
ENSAPLT00000027940
9585647 - 9605749
20103
ENSAPLT00000009210
9586294 - 9605936
19643