Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_12_9624262_9624587_R

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

9624262 - 9624587

Intron Length:

326

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

TGG|GTAAGCTCT

5'SS Class:

strong_major

3'SS Sequence:

CTCCACTACATAG|A

3'SS Class:

major_PPT

U2 Branch Point Sequence:

TTTTAAT

U12 Branch Point Sequence:

TTTTTTTTAATC

Flanking Amino Acid:

AIKNEYEATLDSSGNSNVSR

Intron Amino Acid Position:

128

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

80.9

0.73

72.3

40.1

Major BPS

99.5

1.23

0.5

98.2

4.2

Major PPT

62.8

0.29

0.9

57.2

Minor 5ss

-0.4

2.8

57.8

46.4

Minor BPS

81.7

0.97

0.9

85.33

Associated Gene:

Gene:

Ensembl Gene ID:

ENSAPLG00000008665

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000009017

9610572 - 9629724

19153