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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_12_9680815_9686433_F

Intron Information:

Intron Rank:
5
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
9680815 - 9686433
Intron Length:
5619

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CCT|GTAAGTACA
5'SS Class:
major
3'SS Sequence:
TTTTCCTTCACAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
GTTTAAT
U12 Branch Point Sequence:
TTTTCCTTCACA
Flanking Amino Acid:
SLGIAFTDLPSNLYPTVGLQ
Intron Amino Acid Position:
193

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
75.9
0.61
1.1
74
36.3
Major BPS
81.8
0.79
1.1
84
34.5
Major PPT
88.4
0.86
0.6
83.8
24.4
Minor 5ss
38.9
-1.2
2.7
53.8
42.8
Minor BPS
81.8
0.99
1.6
91.36
30.2

Associated Gene:

Gene:
RANBP10
Ensembl Gene ID:
ENSAPLG00000010803
Chromosome:
12

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000011267
9630506 - 9700442
69937