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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_12_968231_986064_F

Intron Information:

Intron Rank:
145509
Intron Class:
major
Intron Phase:
Intron Coordinates:
968231 - 986064
Intron Length:
17834

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAT|GTGAGTGTT
5'SS Class:
strong_major
3'SS Sequence:
TGTTCCTTTGCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ATATTAT
U12 Branch Point Sequence:
TTATTCCAAATT
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
82.1
0.76
0.9
83.4
28
Major BPS
75.9
0.64
1
66.1
40.5
Major PPT
86.4
0.82
0.8
80.9
31
Minor 5ss
35.6
-1.6
3.5
53.7
43.8
Minor BPS
53.4
0.18
2
76.93
39.9

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000028453
Chromosome:
12

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000028457
968138 - 990757
22620