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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_12_9686619_9690035_F

Intron Information:

Intron Rank:
6
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
9686619 - 9690035
Intron Length:
3417

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAA|GTAAGCCAT
5'SS Class:
major
3'SS Sequence:
TCTTACTTTCTAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTCAT
U12 Branch Point Sequence:
ATTTTCTTACTT
Flanking Amino Acid:
RLGEWQAMLQNMVSSYLVHH
Intron Amino Acid Position:
254

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
79.1
0.69
1
71.6
40.1
Major BPS
100
1.24
0.5
100
0
Major PPT
81.3
0.7
0.8
73.6
36.6
Minor 5ss
41.2
-1
3.2
56.8
41.8
Minor BPS
70.9
0.74
1.5
85.57
35

Associated Gene:

Gene:
RANBP10
Ensembl Gene ID:
ENSAPLG00000010803
Chromosome:
12

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000011267
9630506 - 9700442
69937