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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_12_9692823_9694157_F

Intron Information:

Intron Rank:
8
Intron Class:
major-like
Intron Phase:
2
Intron Coordinates:
9692823 - 9694157
Intron Length:
1335

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAA|GTAAGTATG
5'SS Class:
strong_major
3'SS Sequence:
CCTATGAAATCAG|G
3'SS Class:
degenerate_major
U2 Branch Point Sequence:
TTCCTAT
U12 Branch Point Sequence:
TTCCTATGAAAT
Flanking Amino Acid:
EHNPNLLFMLKCRQFVEMVN
Intron Amino Acid Position:
328

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
87.3
0.88
0.9
84.6
33.2
Major BPS
68.8
0.47
1.3
66.7
41.7
Major PPT
58.6
0.19
1.1
56.1
42.4
Minor 5ss
41.1
-1
2.8
51.8
38.9
Minor BPS
48
-0
1.8
68.79
41.4

Associated Gene:

Gene:
RANBP10
Ensembl Gene ID:
ENSAPLG00000010803
Chromosome:
12

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000011267
9630506 - 9700442
69937