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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_12_9694307_9695365_F

Intron Information:

Intron Rank:
9
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
9694307 - 9695365
Intron Length:
1059

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CTG|GTAAGTGCT
5'SS Class:
strong_major
3'SS Sequence:
TCTTAACTTTCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTCTTAA
U12 Branch Point Sequence:
TCCTTCTTAACT
Flanking Amino Acid:
GSNNSHVHSTGADSPTCSNG
Intron Amino Acid Position:
378

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
88.7
0.91
0.8
80.6
31.8
Major BPS
82.2
0.8
0.8
71.9
35.8
Major PPT
81.7
0.71
0.8
78
35
Minor 5ss
35.5
-1.6
3.3
47.5
42.3
Minor BPS
81.1
1.05
1.1
86.99
39.2

Associated Gene:

Gene:
RANBP10
Ensembl Gene ID:
ENSAPLG00000010803
Chromosome:
12

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000011267
9630506 - 9700442
69937