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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_12_9695562_9696829_F

Intron Information:

Intron Rank:
10
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
9695562 - 9696829
Intron Length:
1268

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTATATTTT
5'SS Class:
strong_major
3'SS Sequence:
TCTTTCACCTCAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
CTTTCAC
U12 Branch Point Sequence:
CCTTCTTTCACC
Flanking Amino Acid:
QHSSTSNQETSDSEMEMEAE
Intron Amino Acid Position:
443

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
81.6
0.75
0.9
82.9
29.9
Major BPS
77.7
0.69
1
81
30.2
Major PPT
80.2
0.68
0.8
78.2
29
Minor 5ss
55.6
0.19
2.5
75.5
40.6
Minor BPS
62.6
0.38
1.8
69.26
43

Associated Gene:

Gene:
RANBP10
Ensembl Gene ID:
ENSAPLG00000010803
Chromosome:
12

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000011267
9630506 - 9700442
69937