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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_12_9698408_9700311_F

Intron Information:

Intron Rank:
13
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
9698408 - 9700311
Intron Length:
1904

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TGG|GTAAGGCCT
5'SS Class:
major
3'SS Sequence:
TTTGCCCCCACAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTCTAAA
U12 Branch Point Sequence:
CTCTTCTAAACA
Flanking Amino Acid:
VCAALNSAILESQNLPKQPP
Intron Amino Acid Position:
571

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
79.4
0.69
1
67
44.2
Major BPS
85.3
0.88
0.8
84.2
21.8
Major PPT
76.2
0.59
0.8
69.5
31.3
Minor 5ss
33
-1.9
3.3
40.8
45
Minor BPS
62.5
0.39
1.7
70.02
42.9

Associated Gene:

Gene:
RANBP10
Ensembl Gene ID:
ENSAPLG00000010803
Chromosome:
12

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000011267
9630506 - 9700442
69937