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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_12_9737363_9740136_R

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
9737363 - 9740136
Intron Length:
2774

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTGAGCCAC
5'SS Class:
strong_major
3'SS Sequence:
AATTTTATTTCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ATTTTAT
U12 Branch Point Sequence:
CAGTGTTTAATA
Flanking Amino Acid:
RVLGLLTPAGGQPKAPIKCS
Intron Amino Acid Position:
56

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
83.6
0.79
0.9
68.4
38.7
Major BPS
87.7
0.94
0.8
77.7
36.7
Major PPT
81.9
0.72
0.9
78.8
38.6
Minor 5ss
32.7
-2
3
41
45.6
Minor BPS
53.4
0.1
1.8
59.49
41.4

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000012318
Chromosome:
12

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000012814
9734354 - 9741138
6785