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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_12_9751457_9753419_F

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
9751457 - 9753419
Intron Length:
1963

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GCC|GTGAGTACC
5'SS Class:
major
3'SS Sequence:
TCCCACCCTGCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ACCTGAA
U12 Branch Point Sequence:
GCCACCTGAACA
Flanking Amino Acid:
PLGGLMGAQAVLGLLVWTLI
Intron Amino Acid Position:
184

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
66.3
0.38
1.3
66.2
39.6
Major BPS
60.8
0.27
1
51.3
35.5
Major PPT
73
0.52
0.8
65.6
30
Minor 5ss
33.4
-1.9
2.7
42.8
36.9
Minor BPS
57.8
0.24
1.6
61.91
43.8

Associated Gene:

Gene:
PLLP
Ensembl Gene ID:
ENSAPLG00000016886
Chromosome:
12

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000032570
9750908 - 9754635
3728