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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_12_9757612_9757650_R

Intron Information:

Intron Rank:
5
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
9757612 - 9757650
Intron Length:
39

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GTG|GTGACATCA
5'SS Class:
major
3'SS Sequence:
ATCCTCCTCCTAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
AAATCAT
U12 Branch Point Sequence:
ACATCATTAAAC
Flanking Amino Acid:
RSLDLSSGLVNSSCTTFLFQ
Intron Amino Acid Position:
134

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
65.7
0.37
1.1
60.1
35
Major BPS
71.6
0.54
1
72
33.1
Major PPT
70.4
0.46
0.8
62.3
34
Minor 5ss
38.5
-1.3
3
45.3
44.6
Minor BPS
57.6
0.22
1.7
64.59
40.2

Associated Gene:

Gene:
ARL2BP
Ensembl Gene ID:
ENSAPLG00000012932
Chromosome:
12

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000038847
9757543 - 9761016
3474