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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_12_9788544_9790329_R

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
5UTR
Intron Coordinates:
9788544 - 9790329
Intron Length:
1786

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TAG|GTGAGATTT
5'SS Class:
strong_major
3'SS Sequence:
TTTGCTTTTTCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TAGTAAC
U12 Branch Point Sequence:
GTAACACTGACT
Flanking Amino Acid:
5UTR
Intron Amino Acid Position:
5UTR

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
90
0.94
0.7
86.7
23
Major BPS
66.7
0.42
1.2
67.6
36.5
Major PPT
90.2
0.9
0.7
88.4
28.7
Minor 5ss
38.4
-1.3
3.3
55.7
48.5
Minor BPS
47.4
-0.1
2
68.28
41.6

Associated Gene:

Gene:
RSPRY1
Ensembl Gene ID:
ENSAPLG00000012937
Chromosome:
12

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000029097
9766416 - 9790903
24488