About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_12_9829736_9830276_R

Intron Information:

Intron Rank:
9
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
9829736 - 9830276
Intron Length:
541

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CTC|GTAAGCACT
5'SS Class:
major
3'SS Sequence:
CTTCTCTTTTCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TGTGCAC
U12 Branch Point Sequence:
GTGTCCGCCAGT
Flanking Amino Acid:
AVGQIIQDYDSDKMFPALGF
Intron Amino Acid Position:
307

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
66.7
0.39
1.3
68
42.9
Major BPS
50
-0
1.5
63.1
44.5
Major PPT
89.9
0.9
0.6
88.1
21.8
Minor 5ss
43.5
-0.7
2.8
59.9
38.7
Minor BPS
39.4
-0.7
2.6
60.43
48.7

Associated Gene:

Gene:
CPNE2
Ensembl Gene ID:
ENSAPLG00000013415
Chromosome:
12

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000014049
9818207 - 9859334
41128