About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_12_9830411_9832566_R

Intron Information:

Intron Rank:
8
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
9830411 - 9832566
Intron Length:
2156

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ACT|GTAAGGACT
5'SS Class:
major
3'SS Sequence:
TCTCACACCTCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CTCTCAC
U12 Branch Point Sequence:
TCTCTCACACCT
Flanking Amino Acid:
ILGGCQLMFTVGIDFTASNG
Intron Amino Acid Position:
263

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
70.5
0.48
1.1
69.4
40.8
Major BPS
72.7
0.56
1
75
30.1
Major PPT
70.5
0.46
0.9
66.7
33.8
Minor 5ss
37.8
-1.4
3.3
60.1
44
Minor BPS
44.8
-0.3
2
66.17
44.3

Associated Gene:

Gene:
CPNE2
Ensembl Gene ID:
ENSAPLG00000013415
Chromosome:
12

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000014049
9818207 - 9859334
41128