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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_12_9832627_9835677_R

Intron Information:

Intron Rank:
7
Intron Class:
major-like
Intron Phase:
0
Intron Coordinates:
9832627 - 9835677
Intron Length:
3051

Sequence Information:

Terminal Dinucleotides:
GC-AG
5'SS Sequence:
GGG|GCTGGAGGT
5'SS Class:
weak_major
3'SS Sequence:
TGCTTTCTTTCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TGCTGAA
U12 Branch Point Sequence:
GATTGCTGAAAC
Flanking Amino Acid:
AATAEGQLLGITRDFSFLDY
Intron Amino Acid Position:
243

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
59.6
0.23
1.4
58.3
43.2
Major BPS
67
0.42
1.1
57.3
41.7
Major PPT
86.6
0.82
0.7
84.6
30.4
Minor 5ss
16.4
-3.9
3.8
21.9
37.4
Minor BPS
49.5
-0
2
63.11
41.5

Associated Gene:

Gene:
CPNE2
Ensembl Gene ID:
ENSAPLG00000013415
Chromosome:
12

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000014049
9818207 - 9859334
41128