Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_12_9836255_9838146_R

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

9836255 - 9838146

Intron Length:

1892

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

GAG|GTAAGTGCT

5'SS Class:

strong_major

3'SS Sequence:

CCATACCCTGCAG|G

3'SS Class:

major_PPT

U2 Branch Point Sequence:

CTGTAAC

U12 Branch Point Sequence:

CTCACTGTAACT

Flanking Amino Acid:

GKWMLVHRTEVIKYTLDPVW

Intron Amino Acid Position:

159

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

96.5

1.1

0.7

87.9

25.6

Major BPS

62.2

0.3

1.2

38.7

Major PPT

70.1

0.45

0.9

62.3

34.1

Minor 5ss

35.3

-1.7

3.2

50.4

Minor BPS

52.3

0.15

2.1

71.79

45.5

Associated Gene:

Gene:

CPNE2

Ensembl Gene ID:

ENSAPLG00000013415

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000014049

9818207 - 9859334

41128