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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_12_9872600_9873514_R

Intron Information:

Intron Rank:
45
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
9872600 - 9873514
Intron Length:
915

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTGAGCAGG
5'SS Class:
strong_major
3'SS Sequence:
GCTGTCGTTACAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CAGTAAC
U12 Branch Point Sequence:
CCTACAGTAACA
Flanking Amino Acid:
LVKCPEIQFIRLWENPVPKG
Intron Amino Acid Position:
1813

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
83.8
0.8
0.9
68.8
43.8
Major BPS
54.4
0.11
1.2
57
36.4
Major PPT
72.4
0.5
1
64.3
41.6
Minor 5ss
33.3
-1.9
2.8
39.7
45.9
Minor BPS
46.8
-0.2
2.3
60.91
44.9

Associated Gene:

Gene:
NLRC5
Ensembl Gene ID:
ENSAPLG00000014412
Chromosome:
12

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000027619
9872518 - 9911865
39348
ENSAPLT00000027112
9872518 - 9911865
39348
ENSAPLT00000015067
9872518 - 9911865
39348
ENSAPLT00000034821
9872122 - 9911865
39744