About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_12_9873599_9874253_R

Intron Information:

Intron Rank:
44
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
9873599 - 9874253
Intron Length:
655

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AGA|GTGAGTACA
5'SS Class:
major
3'SS Sequence:
GCTTTTAAAATAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTAAA
U12 Branch Point Sequence:
TTGCTTTTAAAA
Flanking Amino Acid:
LPGMEKLKMLDLEKNRIGAR
Intron Amino Acid Position:
1785

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
73
0.54
1
70.5
35.4
Major BPS
90.4
1
0.7
90.2
19.3
Major PPT
63.4
0.3
1
59.9
39.6
Minor 5ss
31.8
-2.1
2.6
31.3
35.7
Minor BPS
62.6
0.39
1.4
69.43
36.8

Associated Gene:

Gene:
NLRC5
Ensembl Gene ID:
ENSAPLG00000014412
Chromosome:
12

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000027112
9872518 - 9911865
39348
ENSAPLT00000015067
9872518 - 9911865
39348
ENSAPLT00000034821
9872122 - 9911865
39744
ENSAPLT00000027619
9872518 - 9911865
39348