About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_12_9874338_9875510_R

Intron Information:

Intron Rank:
43
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
9874338 - 9875510
Intron Length:
1173

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAT|GTGAGTATG
5'SS Class:
strong_major
3'SS Sequence:
TTGTCTATCTTAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TGTCTAT
U12 Branch Point Sequence:
TCTTGTCTATCT
Flanking Amino Acid:
FQQCPAMEEIILSWNSLGDG
Intron Amino Acid Position:
1757

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
81.2
0.74
1
79.9
34.9
Major BPS
58.6
0.22
1.4
58.5
47.9
Major PPT
75.4
0.57
0.8
74.5
35
Minor 5ss
36.3
-1.5
2.9
47
41.7
Minor BPS
46.9
-0.1
2.3
71.91
45.3

Associated Gene:

Gene:
NLRC5
Ensembl Gene ID:
ENSAPLG00000014412
Chromosome:
12

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000034821
9872122 - 9911865
39744
ENSAPLT00000027619
9872518 - 9911865
39348
ENSAPLT00000027112
9872518 - 9911865
39348
ENSAPLT00000015067
9872518 - 9911865
39348