About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_12_9875595_9875746_R

Intron Information:

Intron Rank:
42
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
9875595 - 9875746
Intron Length:
152

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TGA|GTGAGTACC
5'SS Class:
major
3'SS Sequence:
TCCCCTGCTTCAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTCTT
U12 Branch Point Sequence:
TTTTCTTTCTCC
Flanking Amino Acid:
LPRLEHLRKIDLKLCGITDD
Intron Amino Acid Position:
1729

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
72.5
0.53
1
68.6
36.4
Major BPS
39.5
-0.6
4.3
85.7
34.9
Major PPT
75.5
0.57
0.8
72.4
32.3
Minor 5ss
32.8
-2
2.6
34.8
34.3
Minor BPS
46.6
-0.2
3.6
77.75
38.7

Associated Gene:

Gene:
NLRC5
Ensembl Gene ID:
ENSAPLG00000014412
Chromosome:
12

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000027619
9872518 - 9911865
39348
ENSAPLT00000027112
9872518 - 9911865
39348
ENSAPLT00000015067
9872518 - 9911865
39348
ENSAPLT00000034821
9872122 - 9911865
39744