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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_12_9875831_9876757_R

Intron Information:

Intron Rank:
41
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
9875831 - 9876757
Intron Length:
927

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAGGTCGT
5'SS Class:
strong_major
3'SS Sequence:
ATTATTCTTATAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ACTTAAA
U12 Branch Point Sequence:
TTCTCCATTATT
Flanking Amino Acid:
LVACGLLEEISLSENDLGEG
Intron Amino Acid Position:
1701

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
84.6
0.82
1
72.7
44.5
Major BPS
69
0.47
1
69.9
32.6
Major PPT
79.5
0.66
0.8
73.8
36.2
Minor 5ss
34.5
-1.8
3.3
50
46.3
Minor BPS
59.6
0.38
1.9
81.01
40.8

Associated Gene:

Gene:
NLRC5
Ensembl Gene ID:
ENSAPLG00000014412
Chromosome:
12

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000027619
9872518 - 9911865
39348
ENSAPLT00000027112
9872518 - 9911865
39348
ENSAPLT00000015067
9872518 - 9911865
39348
ENSAPLT00000034821
9872122 - 9911865
39744