About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_12_9879830_9879921_R

Intron Information:

Intron Rank:
36
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
9879830 - 9879921
Intron Length:
92

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAT|GTAAGTATG
5'SS Class:
strong_major
3'SS Sequence:
ATGTCCTTTCCAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
GCTTGAT
U12 Branch Point Sequence:
ACGAGCTTGATG
Flanking Amino Acid:
LCKMPSLKRLILNHNSIGND
Intron Amino Acid Position:
1561

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
85.5
0.84
1
83.8
34.5
Major BPS
66.1
0.4
1.3
59.3
47.1
Major PPT
79.2
0.66
0.9
70
40.8
Minor 5ss
41.8
-0.9
2.8
56.1
41.3
Minor BPS
45.6
-0.4
1.9
44.66
42.1

Associated Gene:

Gene:
NLRC5
Ensembl Gene ID:
ENSAPLG00000014412
Chromosome:
12

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000015067
9872518 - 9911865
39348
ENSAPLT00000034821
9872122 - 9911865
39744
ENSAPLT00000027619
9872518 - 9911865
39348
ENSAPLT00000027112
9872518 - 9911865
39348