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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_12_9880716_9881387_R

Intron Information:

Intron Rank:
34
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
9880716 - 9881387
Intron Length:
672

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TGA|GTATGTCCC
5'SS Class:
major
3'SS Sequence:
CGCTATTTCTCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTCTTAT
U12 Branch Point Sequence:
TCTTATCTAATC
Flanking Amino Acid:
LLPLPKLKKFELTSCSIMPT
Intron Amino Acid Position:
1505

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
65.9
0.38
1.1
56.1
41.5
Major BPS
91.4
1.03
0.7
79.9
34.9
Major PPT
75
0.56
0.9
72.1
37.6
Minor 5ss
42.8
-0.8
2.7
50.8
39.6
Minor BPS
53.7
0.1
1.8
67.62
38.3

Associated Gene:

Gene:
NLRC5
Ensembl Gene ID:
ENSAPLG00000014412
Chromosome:
12

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000034821
9872122 - 9911865
39744
ENSAPLT00000027619
9872518 - 9911865
39348
ENSAPLT00000015067
9872518 - 9911865
39348