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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_12_9881472_9881866_R

Intron Information:

Intron Rank:
33
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
9881472 - 9881866
Intron Length:
395

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTGAGTTGC
5'SS Class:
strong_major
3'SS Sequence:
TCTGTTCTTGCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
CTCAGAT
U12 Branch Point Sequence:
GGATCATCAGCT
Flanking Amino Acid:
LEKCIQLQELRWSHVELHDD
Intron Amino Acid Position:
1477

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
90.7
0.96
0.8
78.3
32.5
Major BPS
61.8
0.29
1.1
58.3
39.2
Major PPT
86
0.81
0.8
80.6
31.4
Minor 5ss
35.1
-1.7
2.8
43.9
43.9
Minor BPS
46.5
-0.1
2
64.89
44.3

Associated Gene:

Gene:
NLRC5
Ensembl Gene ID:
ENSAPLG00000014412
Chromosome:
12

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000015067
9872518 - 9911865
39348
ENSAPLT00000034821
9872122 - 9911865
39744
ENSAPLT00000027619
9872518 - 9911865
39348