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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_12_9882615_9883236_R

Intron Information:

Intron Rank:
31
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
9882615 - 9883236
Intron Length:
622

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAC|GTAAGTAGC
5'SS Class:
major
3'SS Sequence:
CTCTATCTTCCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTATGAT
U12 Branch Point Sequence:
TGTTCTCTAATC
Flanking Amino Acid:
VQACGNITAITICKDKSLFQ
Intron Amino Acid Position:
1422

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
79
0.68
1.3
76.2
39.9
Major BPS
84.6
0.86
1
74
41.2
Major PPT
81.6
0.71
0.8
72.8
37.2
Minor 5ss
37.5
-1.4
2.7
45.1
35.9
Minor BPS
66
0.48
1.6
75.77
34.5

Associated Gene:

Gene:
NLRC5
Ensembl Gene ID:
ENSAPLG00000014412
Chromosome:
12

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000034821
9872122 - 9911865
39744
ENSAPLT00000027619
9872518 - 9911865
39348
ENSAPLT00000027112
9872518 - 9911865
39348
ENSAPLT00000015067
9872518 - 9911865
39348