Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_12_9883324_9883939_R

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

9883324 - 9883939

Intron Length:

616

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

CAG|GTACAGTGT

5'SS Class:

major

3'SS Sequence:

TTGTGCTTTACAG|C

3'SS Class:

strong_PPT

U2 Branch Point Sequence:

ATGTGAA

U12 Branch Point Sequence:

TTGTGCTTTACA

Flanking Amino Acid:

LRKTSGPLKISIKEPWVCKK

Intron Amino Acid Position:

1393

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

71.1

0.5

1.1

63.9

42.9

Major BPS

63.3

0.33

1.2

55.1

42.1

Major PPT

82.7

0.74

0.9

76.3

37.8

Minor 5ss

36.7

-1.5

3.6

48.2

Minor BPS

60.1

0.31

2.1

75.18

42.3

Associated Gene:

Gene:

NLRC5

Ensembl Gene ID:

ENSAPLG00000014412

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000015067

9872518 - 9911865

39348

ENSAPLT00000034821

9872122 - 9911865

39744

ENSAPLT00000027619

9872518 - 9911865

39348

ENSAPLT00000027112

9872518 - 9911865

39348