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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_12_9884024_9884107_R

Intron Information:

Intron Rank:
29
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
9884024 - 9884107
Intron Length:
84

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAT|GTGAGTTAA
5'SS Class:
strong_major
3'SS Sequence:
CTTTTTTTTCTAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTATAAT
U12 Branch Point Sequence:
TGTTTGTAAACT
Flanking Amino Acid:
LEKCTSLTEYISSSNNLTVH
Intron Amino Acid Position:
1365

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
80.8
0.73
1
78.4
25.8
Major BPS
87.8
0.94
0.9
86.6
28.1
Major PPT
90.3
0.91
0.6
84.6
30.3
Minor 5ss
36.5
-1.5
2.9
44.6
43.6
Minor BPS
53.8
0.2
2.3
79.89
42.3

Associated Gene:

Gene:
NLRC5
Ensembl Gene ID:
ENSAPLG00000014412
Chromosome:
12

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000034821
9872122 - 9911865
39744
ENSAPLT00000027619
9872518 - 9911865
39348
ENSAPLT00000027112
9872518 - 9911865
39348
ENSAPLT00000015067
9872518 - 9911865
39348