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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_12_9884192_9884813_R

Intron Information:

Intron Rank:
28
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
9884192 - 9884813
Intron Length:
622

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTAAACAAT
5'SS Class:
strong_major
3'SS Sequence:
TGCATCCTTTCAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TGTTCAT
U12 Branch Point Sequence:
TCATAAGGAACT
Flanking Amino Acid:
TSRDDPRKILSLTECNFQAE
Intron Amino Acid Position:
1337

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
82.6
0.77
1
80.3
34.3
Major BPS
84.8
0.86
1
85.7
34.9
Major PPT
77.4
0.62
0.9
73.4
37
Minor 5ss
40.4
-1.1
3.1
56.9
47.4
Minor BPS
42.2
-0.5
2.4
64.18
45.3

Associated Gene:

Gene:
NLRC5
Ensembl Gene ID:
ENSAPLG00000014412
Chromosome:
12

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000015067
9872518 - 9911865
39348
ENSAPLT00000034821
9872122 - 9911865
39744
ENSAPLT00000027619
9872518 - 9911865
39348
ENSAPLT00000027112
9872518 - 9911865
39348