Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_12_9886358_9886823_R

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

9886358 - 9886823

Intron Length:

466

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

AGA|GTAAGTGGG

5'SS Class:

major

3'SS Sequence:

TTTTGCCTTTCAG|T

3'SS Class:

strong_PPT

U2 Branch Point Sequence:

TTTCTAC

U12 Branch Point Sequence:

GTTTTTCTACCT

Flanking Amino Acid:

LEQHGRLAEVDLSRNQLGDE

Intron Amino Acid Position:

1257

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

73.4

0.55

1.1

60.8

44.4

Major BPS

63.9

0.35

1.3

64.5

42.5

Major PPT

88.2

0.86

0.7

85.4

29.3

Minor 5ss

33.4

-1.9

3.2

36.7

41.6

Minor BPS

52.6

0.16

1.9

76.65

40.1

Associated Gene:

Gene:

NLRC5

Ensembl Gene ID:

ENSAPLG00000014412

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000027619

9872518 - 9911865

39348

ENSAPLT00000027112

9872518 - 9911865

39348

ENSAPLT00000015067

9872518 - 9911865

39348

ENSAPLT00000034821

9872122 - 9911865

39744