Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_12_9887951_9888059_R

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

9887951 - 9888059

Intron Length:

109

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

TCG|GTAAGACAC

5'SS Class:

strong_major

3'SS Sequence:

CTCTTTGCTTCAG|G

3'SS Class:

strong_PPT

U2 Branch Point Sequence:

TGCTGAA

U12 Branch Point Sequence:

CATTGCTGAAGG

Flanking Amino Acid:

LCERIRKVEVRSNQNAFLHL

Intron Amino Acid Position:

1208

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

80.4

0.72

66.4

39.5

Major BPS

0.42

1.1

57.3

41.7

Major PPT

82.3

0.73

0.8

80.3

31.8

Minor 5ss

32.7

-2

3.1

43.6

Minor BPS

45.9

-0.4

2.2

53.11

47.3

Associated Gene:

Gene:

NLRC5

Ensembl Gene ID:

ENSAPLG00000014412

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000027619

9872518 - 9911865

39348

ENSAPLT00000027112

9872518 - 9911865

39348

ENSAPLT00000015067

9872518 - 9911865

39348

ENSAPLT00000034821

9872122 - 9911865

39744