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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_12_9888150_9888709_R

Intron Information:

Intron Rank:
22
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
9888150 - 9888709
Intron Length:
560

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTAATGTTA
5'SS Class:
strong_major
3'SS Sequence:
CTTTCCTTTTCAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ATTTCAT
U12 Branch Point Sequence:
GGGACCTGATTT
Flanking Amino Acid:
LPYLCHLTLLSIKNSTFSPR
Intron Amino Acid Position:
1178

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
81.6
0.75
1
77.6
33
Major BPS
91.2
1.02
0.7
91.7
20.2
Major PPT
90.3
0.91
0.6
88.3
21.3
Minor 5ss
40.4
-1.1
3.3
55.8
48.3
Minor BPS
46.9
-0.1
1.7
59.47
43.5

Associated Gene:

Gene:
NLRC5
Ensembl Gene ID:
ENSAPLG00000014412
Chromosome:
12

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000034821
9872122 - 9911865
39744
ENSAPLT00000027619
9872518 - 9911865
39348
ENSAPLT00000027112
9872518 - 9911865
39348
ENSAPLT00000015067
9872518 - 9911865
39348