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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_12_9888794_9889411_R

Intron Information:

Intron Rank:
21
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
9888794 - 9889411
Intron Length:
618

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAA|GTAAGTTTC
5'SS Class:
strong_major
3'SS Sequence:
CCTTGTTTTACAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
GTCTAAG
U12 Branch Point Sequence:
CCTTGTTTTACA
Flanking Amino Acid:
LVHCTQLTEINLSGNPLSDQ
Intron Amino Acid Position:
1150

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
87.5
0.88
0.9
85.1
25.6
Major BPS
52.8
0.07
1.7
63.6
42.5
Major PPT
85
0.79
0.8
78.9
33.1
Minor 5ss
46.5
-0.4
2.7
61.9
36.7
Minor BPS
49.2
-0
2.1
62.29
44.3

Associated Gene:

Gene:
NLRC5
Ensembl Gene ID:
ENSAPLG00000014412
Chromosome:
12

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000027619
9872518 - 9911865
39348
ENSAPLT00000027112
9872518 - 9911865
39348
ENSAPLT00000015067
9872518 - 9911865
39348
ENSAPLT00000034821
9872122 - 9911865
39744