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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_12_9890474_9890774_R

Intron Information:

Intron Rank:
19
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
9890474 - 9890774
Intron Length:
301

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAAAATCA
5'SS Class:
strong_major
3'SS Sequence:
GTTCTTTCCCCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
AAATGAT
U12 Branch Point Sequence:
ATCAGCACAAAT
Flanking Amino Acid:
VVHLTFWERIRDRSTGRLRR
Intron Amino Acid Position:
1097

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
82
0.75
0.9
73.8
30.8
Major BPS
68
0.45
1
57.8
39
Major PPT
80.7
0.69
0.8
73.1
37.3
Minor 5ss
37.6
-1.4
3.1
48.6
47.1
Minor BPS
40.3
-0.6
2.1
57.98
44.2

Associated Gene:

Gene:
NLRC5
Ensembl Gene ID:
ENSAPLG00000014412
Chromosome:
12

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000015067
9872518 - 9911865
39348
ENSAPLT00000034821
9872122 - 9911865
39744
ENSAPLT00000027619
9872518 - 9911865
39348
ENSAPLT00000027112
9872518 - 9911865
39348