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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_12_9890823_9890948_R

Intron Information:

Intron Rank:
18
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
9890823 - 9890948
Intron Length:
126

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTATGACCA
5'SS Class:
strong_major
3'SS Sequence:
TTTCTGGTTACAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTATTAT
U12 Branch Point Sequence:
CCATCCTTATTA
Flanking Amino Acid:
TLERIKTMNLSLGHMQVVHL
Intron Amino Acid Position:
1081

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
81.3
0.74
1
67
38.3
Major BPS
84.7
0.86
1
74.3
40.7
Major PPT
82.1
0.72
0.9
75.8
38.2
Minor 5ss
38.3
-1.3
3
48.9
46.8
Minor BPS
59.9
0.31
1.6
63.61
43.3

Associated Gene:

Gene:
NLRC5
Ensembl Gene ID:
ENSAPLG00000014412
Chromosome:
12

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000027619
9872518 - 9911865
39348
ENSAPLT00000027112
9872518 - 9911865
39348
ENSAPLT00000015067
9872518 - 9911865
39348
ENSAPLT00000034821
9872122 - 9911865
39744